ITACA.SB Workshop
2 - 4 April 2025 | Bari, Italy

Integrating BioSAXS and High-Performance Computing:
Advancements in Structural Biology and Nanoscience

This event brings together leading experts in Bio-SAXS and high-performance computing, offering a collaborative platform to explore their integration for innovative applications in structural biology and nanoscience.

The workshop also celebrates the commissioning of state-of-the-art Bio-SAXS instrumentation and a High-Performance Computing at the CNR Institute of Crystallography (CNR-IC), implemented within the ITACA.SB project, aiming to strengthen Italy’s structural biology capabilities within the Instruct-ERIC infrastructure.

Event free of charge, however the registration is mandatory.

➡️➡️➡️  REGISTER HEREdeadline 29 February 2024 (23:59 CET) (closed)

Venue:

Villa Romanazzi Carducci

Via Giuseppe Capruzzi, 326

70124 Bari, Italy

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Speakers

Nathan Cowieson

Diamond Light Source Ltd

Abril Gijsbers Alejandre

Universidad Nacional Autónoma de México

Cy Jeffries

EMBL Hamburg

Eugene Krissinel

Research Complex at Harwell UK

Alessandra Magistrato

SISSA-IOM Trieste

Milot Mirdita

Seoul National University

Gemma Newby

Xenocs France

Helio Cesar Nogueira Tolentino

Brazilian Synchrotron Light Laboratory

Ulf Olsson

Lund Univeristy

Nuria Sanchez Puig

Universidad Nacional Autónoma de México

Johannes Schwab

University of Innsbruck

Thibaud Stoll

Excelsus Structural Solutions (Swiss) AG

Alexander Varnek

University of Strasbourg

Programme (in PDF)

13:00 – 13:15 – Participants arrival

13:15 – 13:50 – Institutional greetings – Michele Saviano, Scientific Coordinator of ITACA.SB

13:50 – 14:00 – Workshop Introduction – Cinzia Giannini & Dritan Siliqi

14:00 – 14:45 – Exploring the Power of SAXS for the Advanced Characterization of Biopharmaceuticals – Thibaud Stoll

14:45 – 15:30 – SIRIUS Synchrotron Beamlines: New Tools to Investigate Heterogeneous and Biological Materials – Helio Cesar Nogueira Tolentino

15:30 – 16:00 – Coffee break

16:00 – 17:15 – Exploring the Conformational Dynamics of the SBDS and EFL1 Proteins: Understanding the Molecular Mechanisms in Shwachman-Diamond Syndrome – Nuria Sanchez Puig

17:15 – 18:00 – Shedding light on ESX-1 substrates: An integrated structural approach to the mycobacterial secretion system – Abril Gijsbers Alejandre

19:00 – Welcome cocktail

Session 1: BioSAXS a valid and powerful technique for Structural Biology and Nanoscience – chair Cinzia Giannini

09:00 – 09:40 – Chaperone protein self-assembly and suppression of amyloid formation – Ulf Olsson

09:40 – 10:20 – SAXS in the context of a structural biology project – Nathan Cowieson

10:20 – 11:00 – Advances in SAXS methods for probing the structure and dynamics with fourth generation synchrotron sources – Narayanan Theyencheri

11:00 – 11:30 – Coffee break

11:30 – 12:10 – The Small Angle Scattering Biological Data Bank – SASBDB – Cy Jeffries

12:10 – 12:30 – SAXS WAXS – Xenocs, Your Access To The Nanoscale In The Lab – Gemma Newby

12:30 – 14:00 – Lunch

Session 2: Hight Performance Computing (HPC) applied on Structural Biology and Drug Design – chair Dritan Siliqi

14:00 – 14:40 – CCP4: From Legacy to the Cloud – A High-Throughput Evolution – Eugene Krissinel

14:40 – 15:20 – Estimating molecular motions from cryo-EM images with DynaMight – Johannes Schwab

15:20 – 16:00 – Protein Analysis in the AlphaFold Era – Milot Mirdita

16:00 – 16:30 – Coffee break

16:30 – 17:10 – Exploring Biomolecular Mechanisms through All-Atom Simulations: from RNA Metabolism to Metal Ion Transport – Alessandra Magistrato

17:10 – 17:50 – Chemography approach to (ultra)big chemical space analysis – Alexander Varnek

20:00 – SOCIAL DINNER

09:00 – 11:00 – Visit to IC laboratories – Guided tour

11:00 – Participant departures

Scientific Committee

Davide Altamura

CNR-IC Bari

Liberato De Caro

CNR-IC Bari

Cinzia Giannini

CNR-IC Bari

Michele Saviano

CNR-IC URT Caserta

Teresa Sibillano

CNR-IC Bari

Dritan Siliqi

CNR-IC Bari

Giancarlo Tria

CNR-IC URT Caserta

Questions? Contact us